Anim Biosci > Volume 35(11); 2022 > Article |
|
Gene | SNP | GenkBank accession number | Location | Amino acid substitution | Breeds analyzed | Associated trait | Reference |
---|---|---|---|---|---|---|---|
HSP70 | A-12G | AY149618.1 | 5′ Flanking Region | None | Holstein cattle | LA, DA,and SOD | [17] |
C181T | AY149618.1 | 5′ Flanking Region | None | Holstein cattle | LA | [17] | |
A72G | AY149618.1 | 5′ Flanking Region | None | Holstein cattle | LPO | [17] | |
C131G | AY149618.1 | 5′ Flanking Region | None | Holstein cattle | DA and SOD | [17] | |
−42− (C/T) | AY149618.1 | Promoter | None | Inner-Mongolia Sanhe cattle | Blood triiodothyronine (T3) | [43] | |
−105+(G/T) | AY149618.1 | 5′-UTR | None | Inner-Mongolia Sanhe cattle | Blood triiodothyronine (T3) and thyroxine (T4) | [43] | |
−181+(C/T) | AY149618.1 | 5′-UTR | None | Inner-Mongolia Sanhe cattle | Blood triiodothyronine (T3) | [43] | |
−205+(C/T) | AY149618.1 | 5′-UTR | None | Inner-Mongolia Sanhe cattle | Blood triiodothyronine (T3) | [43] | |
G149T | NM_174550.1 | Coding region | Aspartate to Tyrosine | Tharparkar cattle | RT, ART, HTC, and RR | [44] | |
G149C | NM_174550.1 | Coding region | Aspartate to Histidine | Tharparkar cattle | RT, ART, HTC, and RR | [44] | |
C146T | NM_174550.1 | Exon 1 | None | Nigerian zebu: White Fulani, Sokoto Gudali, Red Bororo, and Ambala | HTC | [45] | |
C151T | NM_174550.1 | Exon 1 | Serine to Leucine | Nigerian zebu: White Fulani, Sokoto Gudali, Red Bororo, and Ambala | HTC | [45] | |
G90A | NM_174550.1 | Exon 1 | Alanine to Arginine | Nigerian zebu: White Fulani, Sokoto Gudali, Red Bororo, and Ambala | HTC | [45] | |
C219A | NM_174550.1 | Exon 1 | Cysteine to Threonine | Nigerian zebu: White Fulani, Sokoto Gudali, Red Bororo, and Ambala | HTC | [45] | |
G1128T | U09861 | Promoter region | None | Holstein cattle | Cell viability, HSP70 expression | [50] | |
HSP90 | T116G | AC_000178.1 | Exon 3 | Threonine to Histidine | Red Bororo cattle | BT, RT, RR, and HTC | [18] |
G220C | AC_000178.1 | Exon 3 | Arginine to Serine | Sokoto Gudali | BT, RT, RR, and HTC | [18] | |
G346A | AC_000178.1 | Exon 3 | Serine to Leucine | Ambala | BT, RT, RR, and HTC | [18] | |
G390A | AC_000178.1 | Exon 3 | Aspartate to Tyrosine | White Fulani | BT, RT, RR, and HTC | [18] | |
HSP90AB1 | T4338C | NW001494158 | Intron 9 | None | White Lamphun and Mountainas | HTC | [61] |
T4338C | NW001494158 | Intron 9 | None | Sahiwal and Frieswal | HTC | [62] | |
C5248T | NW001494158 | Intron 11 | None | White Lamphun and Mountainas | HTC | [61] | |
C1787061T | Not mentioned | Intron 10 | None | Sahiwal | RT | [123] | |
HSP90AA1 | g.1209A>G | AC_000178.1 | Exon 3 | None | Karan Fries | RR, RT, and HTC | [27] |
g.−87G>C | AC_000178.1 | Promoter region | None | Chinese Holstein | HSP90AA1 mRNA expression | [63] | |
HSF1 | g.616087A>G | NC_037341.1 | Coding region | Valine into Alanine | Chinese cattle | T, RH, THI | [19] |
T909C | NC_007312.2 | Intron 3 | None | Chinese Holstein | PCE | [71] | |
G4693T | NC_007312.2 | 3’-UTR | None | Chinese Holstein | HTC, HSF1 expression | [71] | |
G1451T | NC_007311.3 | Intron 3 | None | Chinese Holstein | None | [74] | |
EIF2AK4 | g.35615224 T>G, | NC_037337.1 | Exon 6 | Isoleucine to Serine | Chinese cattle, Burma, Angus | T, RH, and THI | [20] |
HSBP1 | g.324G>C | NC_007316.3 | Intron 1 | None | Chinese Holstein | None | [21] |
g.589C>T | NC_007316.3 | Intron 1 | None | Chinese Holstein | None | [21] | |
g.651C>G | NC_007316.3 | Exon 2 | None | Chinese Holstein | PCE | [21] | |
HSPB8 | g.507G>A | AC_000174.1 | Exon 1 | None | Sahiwal | RR, RT, and HTC | [22] |
g.881T>C | AC_000174.1 | Intron 1 | None | Sahiwal | None | [22] | |
HSPB7 | g.136054902 C>G | NC_037329.1 | Coding region | Alanine to Glycine | Chinese cattle, Angus, Indian zebu | T, RH, and THI | [23] |
MYO1A | rs208210464 | NC_037332.1 | Exon region | None | Chinese cattle, Angus, Indian zebu | T, RH, THI, and SR | [24] |
rs110123931 | NC_037332.1 | Exon region | None | Chinese cattle, Angus, Indian zebu | T, RH, THI, and SR | [24] | |
rs209999142 | NC_037332.1 | Exon region | Phenylalanine to Serine | Chinese cattle, Angus, Indian zebu | T, RH, THI, and SR | [24] | |
rs135771836 | NC_037332.1 | Intron region | None | Chinese cattle, Angus, Indian zebu | T, RH, THI, and SR | [24] | |
g.56390345 A>G | NC_037332.1 | Coding region | Isoleucine into Valine | Chinese cattle, Angus, Burma | T, RH, THI, and SR | [109] | |
ATP1A1 | −14103G>A | NC_007301.3 | Exon 14 | None | Holstein cattle | HTC and RR | [25] |
−14242C>T | NC_007301.3 | Intron 14 | None | Holstein cattle | HTC and RR | [25] | |
C2789A | NC_007301.3 | Exon 17 | None | Holstein cattle | Heat resistance | [110] | |
C2789A | NC_007301.3 | Exon 17 | None | Vrindavani and Tharparkar | HTC and RT | [112] | |
T27008243C | Not mentioned | Not mentioned | Not mentioned | Sahiwal | RR | [111] | |
A27008223G | Not mentioned | Not mentioned | Not mentioned | Karan Fries | RR | [111] |
SNP, single-nucleotide polymorphism; HSP70, heat shock proteins 70; LA, lactate concentration in blood; SOD, superoxide dismutase concentration in blood; LPO, lipid perioxide concentration in blood; DA, dopamine concentration in blood; RT, rectal temperature; ART, average rectal temperature; HTC, heat tolerance coefficient; RR, respiration rate; ARR, average respiration rate; BT, body temperature; T, annual temperature; RH, relative humidity; THI, temperature humidity index; SR, average annual sunshine hours (100-cloudiness); PCE, potassium content in erythrocytes; HSF1, heat shock factors 1; EIF2AK4, eukaryotic translation initiation factor 2-alpha kinase 4; HSBP1, heat shock factor binding protein 1; MYO1A, myosin-1a; ATP1A1, ATPase Na+/K+ transporting subunit alpha 1.
Association analysis of polymorphisms in six keratin genes with wool traits in sheep2018 May;31(6)