INTRODUCTION
As the mainstay of the global dairy industry, the performance of Holstein heifers is directly related to the economic efficiency of the dairy industry. In northern China’s pastoral regions (e.g., Inner Mongolia), Holstein heifers reared under traditional forage-based diets often exhibit delayed puberty and low first-service conception rates (<50%), leading to prolonged calving intervals and economic losses. Given these challenges, this study hypothesizes that graded dietary energy levels can modulate the hypothalamic-pituitary-gonadal axis through rumen microbiota-metabolome interactions, thereby optimizing reproductive outcomes and growth performance. Local farmers increasingly adopt high-concentrate diets to accelerate reproductive maturity, yet the optimal energy density for balancing rumen health and endocrine function remains unclear. This research employs a multi-omics approach—integrating rumen microbiome and metabolomics—to explore how dietary energy levels modulate rumen microbiota and metabolic pathways. Specifically, we aim to determine the optimal energy density needed to balance rumen health and endocrine function, with broader implications for precision feeding strategies in semi-arid grazing systems. Dietary energy critically regulates ruminant physiology, directly impacting production, health, and nutrient utilization efficiency. Scientific regulation of dietary energy levels is paramount for optimizing ruminant feeding strategies and enhancing farming efficiency [
1,
2].
Optimal dietary energy levels stimulate animal growth, facilitate early service, reduce calving intervals, and enhance breeding benefits. Most large-scale cattle farms set the age at first service at 13–14 months, with some advancing to 12 months [
3]. Early heifer service, pregnancy, parturition, and lactation offer economic benefits, yet premature pregnancy may divert energy from somatic growth [
4–
6], potentially impairing mammary gland development and reproductive organ maturation. This energy diversion can result in suboptimal milk synthesis capacity in subsequent lactations, ultimately reducing milk yield. Research indicates that the optimal first service age of dairy cows is positively correlated with productive lifespan. The transition to more refined and efficient dairy practices necessitates a comprehensive exploration of how varying energy levels during the critical initial service period influence not only reproductive outcomes but also other physiological systems.
The rumen microbiota, a critical component of ruminant physiology, is closely linked to nutrient utilization and metabolic processes. The dietary composition influences the structure and function of the rumen microbiota, the molar concentration and proportion of volatile fatty acids (VFAs), and the gastrointestinal tract morphology [
7]. With the intensification of dairy farming, high-concentrate diets have increasingly replaced traditional forage-based regimens. Such dietary shifts alter rumen microecosystem equilibrium and gastrointestinal tract development, which in turn modulate key performance traits including growth efficiency and fecundity [
8]. Furthermore, research indicates that variations in dietary metabolic energy intake can impact serum metabolic hormones and oxidative stress markers [
9]. For instance, high-concentrate diets have been shown to alter gastrointestinal tract development, influencing nutrient absorption and utilization efficiency [
10]. Similarly, studies have demonstrated that dietary energy levels can affect oxidative stress markers, with potential implications for animal health and productivity [
11].
This study employs a multi-omics approach to systematically evaluate how graded dietary energy levels during the first service period affect Holstein heifers’ growth performance, reproductive competence, serum metabolic profiles, antioxidant status, rumen fermentation kinetics, and microbial community assembly. Findings from this study will provide actionable insights for formulating precision feeding strategies that balance early reproductive goals with long-term lactation potential in commercial herds.
MATERIALS AND METHODS
Ethical statement
All experimental protocols in this study were approved by the Animal Care and Ethics Committee of Inner Mongolia Agricultural University (approval number NND 2021104), and the animals were maintained following the institutional guidelines for the care and use of laboratory animals in China.
Experimental design, animals, and management
This experiment was conducted in Shengmu Ranch, located in Inner Mongolia, China. Methodological implementation proceeded through a rigorous selection of bovine subjects meeting predefined criteria (398.96±6.56 kg, 12.72±0.02 months old) from the designated ranch cohort, yielding 45 qualified individuals. Due to population size constraints preventing uniform group distribution, subjects underwent randomized allocation (n = 22/group) using computer-generated permutation sequences. The two groups were a control group (CON, base diet) and a high-energy group (HE, high-energy diet). Although practical constraints limited pen replication, we implemented rigorous matching procedures: Pens were matched for surface area (120 m
2), and feed bunk space (0.8 m/head). Biological sampling employed a stratified design with quintuplicate replicates per experimental condition, each comprising a random selection of 2 subjects from 5-animal cohorts. This configuration statistically ensured reproducibility while maintaining operational feasibility under field constraints. The composition of the diet is shown in
Table 1. The total mixed ration (TMR) was fed twice daily (10:00 a.m. and 5:00 p.m., respectively). All cows ad libitum access to water, and were allowed to move freely within the designated area.
A 7-day preliminary phase preceded the 21-day main trial. All biospecimen collections were strategically timed to exclude phases of the bovine estrous cycle, with rigorous exclusion of samples obtained during follicular and luteal phases. On the 1st and 21st days, before the morning feeding, 10 cows per group were randomly selected to have their body dimensions measured and body weights calculated. Moreover, on the 21st day, before the morning feeding, blood samples were collected from the jugular vein using disposable vacuum ordinary blood collection tubes (KWS Kangweishi). Rumen fluid collection occurred post-morning feeding 2 h using a specialized gastric tube apparatus. Estrus detection was systematically conducted through multiparametric assessment protocols. Natural observation: Observed no fewer than 3 times daily, focusing on whether the cow accepts mounting from other cows, and the quantity and appearance of mucous secretions. Checked follicle development when necessary. Estrous observation times were 6:00, 12:00, 19:00, and 23:00. Tail-base marking: A mark 15 cm long and 3–5 cm wide made daily with paint at the tail base of cows in the breeding group. When paint distribution became irregular, observed hair and external genitalia. After estrus confirmation, maintained estrus records; Gynecological examination: Cows with reproductive diseases were excluded from estrous synchronization and breeding. For cows that did not exhibit estrus recurrence within 33–39 days after breeding, a B-ultrasound instrument (BXL-V60; Zhengzhou Boxianglai Electronic Technology) was employed for pregnancy testing. Pregnancy is diagnosed when the mean follicle diameter reaches approximately 14–15 mm or a follicle wave emerges. During the entire experimental period, the number of estrus occurrences, returns to estrus, miscarriages, cases of empty pregnancy, and successful pregnancies for each cow were meticulously recorded. Subsequently, the estrus rate, conception rate, and pregnancy rate for each group were computed and analyzed.
Sample collection and measurement methods
Growth performance
Individual body weights were recorded pre- and post-trial using a digital scale to calculate average daily gain (ADG). Feed intake was monitored at the group level to determine the average daily feed intake (ADFI) and feed-to-gain (F/G) ratio.
Reproductive performance
The breeding data of Holstein Heifers were recorded, and the estrus rate (number of cows showing estrus/number of cattle to be bred) conception rate (number of pregnancies/number of cattle to be bred), re-estrus rate (number of re-estrus/number of cattle to be bred) pregnancy rate (number of pregnancy/number of cattle to be bred) were calculated.
Serum biochemical, immune, antioxidant, and reproductive hormone indices
Venous blood samples (10 mL) were obtained via jugular venipuncture using disposable needles and collected into vacuum tubes. After centrifugation at 1,200×g for 15 min, the upper serum layer was harvested. All samples underwent hemolysis assessment; only those with yellow and clear serum were retained. They were then aliquoted and stored at –80°C for long-term preservation to ensure sample integrity for subsequent experiments.
Cytokine analysis
Levels of tumor necrosis factor-α (TNF-α), interferon-γ (IFN-γ), interleukin-2 (IL-2), interleukin-4 (IL-4), and interleukin-6 (IL-6) were assessed using enzyme-linked immunosorbent assays (ELISA), performed according to the manufacturer’s instructions.
Antioxidant parameters
Total antioxidant capacity (T-AOC), superoxide dismutase (SOD), glutathione peroxidase (GSH-Px), catalase (CAT), and malondialdehyde (MDA) were quantified using commercial assay kits.
Biochemical parameters
Aspartate aminotransferase (AST), alanine aminotransferase (ALT), alkaline phosphatase (ALP), albumin (ALB), triglycerides (TG), total protein (TP), lactate dehydrogenase (LDH), and glucose (GLU) were determined using a fully automated biochemical analyzer (Hitachi 3100).
Reproductive hormones
Progesterone (Prog), estradiol (E2), luteinizing hormone (LH), follicle-stimulating hormone (FSH), and serum prolactin (PRL) were measured by radioimmunoassay using an automated system (XH-6020 Gamma Counter).
Before each detection, calibration was performed using the quality-control serum provided in the kit. A calibration curve was generated based on the counts per minute of standard samples, and assay values were calculated accordingly. To ensure quality control, each assay batch included standard hormones, quality-control samples with known hormone concentrations, and the to-be-tested samples. The above kits were purchased from Nanjing Jiancheng Bioengineering Institute. All measurements were performed in duplicate with parallel calibration using kit-supplied standards. The reproducibility criteria for data results required compliance with precision thresholds of intra-assay coefficients of variation (CV) <5% and inter-assay (CV) <10%.
Rumen fermentation parameters
Ruminal fluid (100 mL) was collected using a bovine stomach tube cannula. The initial 50 mL aliquot was discarded to prevent salivary contamination. The remaining fluid was filtered through four layers of sterile medical gauze and subsequently aliquoted into 15 mL centrifuge tubes. Rumen fluid pH was measured immediately after collection using a calibrated pH meter (PHS-3C). The concentration of NH
3-N was determined according to the colorimetric method. The composition and content of VFAs were determined by a Shimadzu (GC-2010) gas chromatograph. In the determination of BCP concentration, the rumen microorganisms in the sample were separated by differential centrifugation, the cell wall was broken by ultrasonic instrument, then the protein in the broken cell wall was stained by Coomassie brilliant blue method, and the BCP concentration was determined by colorimetric method at 595 nm by an enzyme-labeling analyzer [
12].
High-throughput 16S ribosomal RNA gene sequencing
Total genomic DNA was extracted from ruminal fluid samples using the TGuide S96 Magnetic Soil Stool DNA Kit (Tiangen Biotech) according to the manufacturer’s instructions. The hypervariable region V3–V4 of the bacterial 16S rRNA gene was amplified with primer pairs 338F: 5′-ACTCCTACGGGAGGCAGCA-3′and806R:5′-GGACT ACHVGGGTWTCTAAT-3′. PCR products were checked on agarose gel and purified through the Omega DNA purification kit (Omega). The purified PCR products were collected and the paired ends (2×250 bp) were performed on the Illumina Novaseq 6000 platform.
Bioinformatic analysis
The qualified sequences with more than 97% similarity thresholds were allocated to one operational taxonomic unit (OTU) using USEARCH (version 10.0). Amplicon sequence variant (ASV) analysis using the DADA2 denoising algorithms. Taxonomy annotation of the OTUs/ASVs was performed based on the Naive Bayes classifier in QIIME2 [
13] using the SILVA database [
14] (release 138.1) with a confidence threshold of 70%. Alpha was performed to identify the complexity of species diversity of each sample utilizing QIIME2 software. Bacterial abundance and diversity were compared by one-way analysis of variance. The sequencing data were analyzed on the BMK Cloud online platform (
https://www.biocloud.net).
Metabolomics analysis and data processing
To comprehensively understand the metabolic changes in response to dietary energy levels, we employed LC-MS metabolomics. Analyses were performed using a Waters Acquity I-Class PLUS UPLC coupled with a Waters Xevo G2-XS QTof mass spectrometer. Chromatography used a Waters UPLC HSS T3 column with mobile phases of 0.1% formic acid in water and acetonitrile, under both positive and negative ion modes. This dual-mode approach allowed for comprehensive detection of a wide range of polar and non-polar metabolites, which is crucial for capturing the complex metabolic responses to dietary changes. Data preprocessing was done using Progenesis QI software, involving peak extraction, alignment, and identification with the METLIN database and an in-house library. The METLIN database was chosen for its extensive coverage of metabolites, which is essential for accurate compound identification. For data analysis, we normalized peak area data and used principal component analysis (PCA) and Spearman correlation to assess sample repeatability. Compounds were identified using the KEGG, HMDB, and lipid maps databases, which provide comprehensive pathway information. These databases were selected based on their relevance to metabolic pathway analysis and their reliability in providing accurate biological context.
Differential metabolites were determined using fold change, p-value, and VIP value from OPLS-DA modeling. This approach helped us identify key metabolites associated with different dietary energy levels, providing insights into the metabolic mechanisms underlying the observed physiological changes.
Statistical analysis
Excel (Microsoft) was used for the preliminary processing of test data processing. SAS 9.2 was used for data variance analysis of data, and Student’s t-tests were used for multiple comparisons among different groups. The final test results were presented were expressed as the mean and standard error of the mean (SEM). p<0.05 indicated a significant difference and p<0.01 indicated a highly significant difference.
DISCUSSION
Growth parameter evaluations revealed comparable outcomes for initial and final weights, ADG, ADFI, and F/G ratio between groups. This aligns with Williams et al [
15]’s findings of similar results in growing heifers fed varying energy densities. It suggests Holstein heifers have adaptive mechanisms to maintain stable growth amid short-term dietary energy fluctuations. However, our study’s growth trend analysis was constrained by limited measurement time points (only days 1 and 21). This restricted our ability to capture detailed growth dynamics and potential anomalies. Future research should include more frequent measurements to better understand growth patterns.
In terms of reproductive performance, the estrus rate, conception rate, and pregnancy rate of the HE group were higher than those of the control group, but the difference was not significant. However, the FSH, LH, and prolactin in the HE group were significantly increased, while the E2 and Prog contents were not significantly different. FSH and LH are key regulators of the ovarian cycle, with FSH stimulating follicular development and LH triggering ovulation and luteinization. The significant increase in these hormones in the HE group suggests enhanced follicular maturation and ovulation efficiency, which may contribute to the observed trend of higher conception rates despite the lack of statistical significance. Additionally, PRL plays a crucial role in maintaining pregnancy by supporting corpus luteum function and Prog secretion. The elevation in PRL levels could indicate improved luteal phase maintenance, potentially supporting early pregnancy establishment. However, the lack of significant differences in estrus and conception rates may imply that these hormonal changes are not sufficient to drive significant improvements in reproductive outcomes within the study’s timeframe or that other factors are modulating these complex physiological processes. Further research is needed to explore the functional implications of these hormonal changes and their integration with other reproductive outcomes. This is consistent with the findings of Mellouk et al [
16], who found that Holstein heifers fed a diet of different energy levels during the perinatal period had earlier onset of luteal activity after first calving in cows in the HE group, and the LH pulse frequency was higher than that in the low-energy group, suggesting that higher energy levels may potentially affect the reproductive performance of cows by modulating the secretion of reproductive-related hormones. While reproductive rate differences were not significant in this experiment, the hormonal changes imply that energy may regulate reproductive physiology, possibly under long-term or more extreme energy conditions. These results indicate a trend that could become significant with larger sample sizes or different experimental designs, and they provide a basis for future research to explore the underlying mechanisms of energy-reproductive hormone interactions.
In the serum biochemical indicators, TG were significantly increased in the HE group, which is consistent with the results of Yin [
17], and Solomon et al [
18]. Their study found that the serum TG content in the high and medium metabolic energy groups was significantly higher than that in the low-energy group. It may be that the appropriate increase in dietary energy levels increases the amount of energy and fat intake in the animal body, promoting the activation of the body’s fat transport mechanism, and resulting in serum TG content increases [
19]. The balance of TG synthesis or metabolism is shifted towards synthesis, but there is no obvious damage or stress to the function of organs such as the liver. Other metabolic enzyme-related indicators of the liver are relatively stable, such as AST and ALT. The lack of significant differences in these liver enzymes, despite changes in TG, implies that the HE diet may be modulating lipid metabolism without causing detrimental effects on liver function.
Interleukin (IL-2, IL-6, IL-10) is a cytokine that interacts with leukocytes during the immune response process, and has the role of transmitting information, activating and regulating immune cells [
20]. TNF-α and IFN-γ are innate immune-related cytokines with pro-inflammatory properties, which play a role in host defense, inducing inflammation and triggering apoptosis [
21,
22]. In terms of immune indexes, IL-2 and IL-6 in the HE group were significantly higher than those in the control group, IL-4 was significantly lower than that in the control group, and the content of TNF-α and IFN-γ was significantly lower than that in the control group. This shows that energy levels affect the immune regulation of cows. The results of Moyes et al [
23] also show that the negative balance of energy and energy reduces the immunity of cows. This experiment found that HE diets may stimulate the immune response of the body increase the secretion of pro-inflammatory cytokines (IL-2, IL-6), and inhibit the secretion of some anti-inflammatory cytokines (IL-4) and immunomodulatory cytokines (TNF-α, IFN-γ). This change in immune status may be related to the regulation of energy in the body’s metabolism and stress response.
As a key marker of oxidative stress, MDA reflects the level and degree of lipid peroxidation in the body, and is one of the important indicators for evaluating the redox status of the body [
24,
25]. In the antioxidant index, the MDA in the HE group was significantly lower than that in the control group, this is consistent with the results of Chen et al [
26], the MDA level gradually decreased with the increase of energy. There was no significant difference in GSH-Px, SOD, and T-AOC. MDA is a key indicator of oxidative stress, reflecting the level of lipid peroxidation in the body. The significant reduction in MDA suggests that HE diets may reduce oxidative stress, potentially benefiting the animals’ overall health. However, the lack of significant changes in antioxidant enzyme activities (GSH-Px, SOD) indicates that the body’s antioxidant defense system may not be significantly activated under the current energy levels. This could imply that the reduction in MDA is due to improved antioxidant efficiency or altered lipid metabolism rather than enhanced antioxidant enzyme activity. This indicates that HE diets lead to changes in lipid metabolism.
Studies have confirmed that the concentration of VFAs in the rumen and the ratio of acetic acid, propionic acid, and butyric acid are closely related to the type of feed and nutrient level. In a HE or concentrate-based diet, the concentration of VFA will increase significantly, with propionic acid increasing particularly significantly [
27]. Rumen fermentation parameters showed that the rumen pH of the HE group was significantly lower than that of the control group, and the total VFAs and acetic acid were significantly higher than those of the control group. In Rabelo et al [
28], it was found that the rumen pH of cows fed low-energy diets was higher than that of cows fed HE diets. Therefore, the higher the energy level in the diet, the lower the rumen pH [
29]. The results of Xia et al [
30] showed that the levels of ruminal bacterial protein, propionate, acetate, and total VFAs in cattle fed the HCP diet were significantly higher than those fed the LCP diet. Bacterial crude protein, propionic acid, butyric acid, and valeric acid were higher than those of the control group, the difference was significant. The lower pH value, higher TVFA, and acetic acid content showed that a HE diet promoted rumen fermentation, increased the accumulation of acidic substances in the rumen, and enhanced carbohydrate fermentation, which was related to the increase of substrate available to rumen microorganisms after the energy level was increased, and the changing of BCP and other indicators also reflected the changes of nutrient utilization and metabolism of rumen microorganisms and aligning with enhanced glucogenic potential in the HE group.
In terms of rumen microbial diversity, the ACE, Chao1, and Simpson indices of the HE group were significantly lower than those of the control group, and the Shannon index was significantly lower than those of the control group, indicating that the HE diet changed the diversity and richness of the rumen microbial community, which was consistent with Qiu et al [
31]’s study on Holstein fattening cattle. The significant decrease in the Shannon index suggests a reduction in microbial diversity, which may indicate a more specialized microbial community rather than dysbiosis. HE diets may be select for specific taxa, such as
Ruminococcus, that are better adapted to utilizing HE substrates, thereby enhancing the community’s specialization and efficiency in energy extraction. Therefore, appropriate dietary energy levels can ensure the normal growth and gastrointestinal health of ruminants [
32].
At the phyla level,
Firmicutes mainly produced acetate, propionate, and butyrate studies have shown that there is a relationship between
Firmicutes and the body’s ability to obtain energy, and their ratio to
Bacteroidetes is of great significance in maintaining homeostasis of the body and promoting the utilization of nutrients [
33]. Specifically, the increase in the number of
Firmicutes and the decrease in the number of
Bacteroidetes contribute to the improvement of nutrient absorption efficiency, which has a positive impact on the body’s metabolic process, which has been fully demonstrated and reflected in previous relevant research results [
34,
35].
Nutritional interventions markedly altered microbial profiles, with HE-fed heifers exhibiting increased
Firmicutes and decreased
Verrucomicrobiota versus controls. Genus-level analysis revealed
Ruminococcus enrichment, aligning with Park et al [
36]’s findings of energy-driven taxonomic shifts across 23 genera. Functional predictions via PICRUSt2 confirmed metabolic pathway variations between dietary regimens.
Ruminococcus in the HE group was beneficial to the biosynthesis of amino acids in the rumen of dairy cows and the metabolism of pyruvate, glycerophospholipids, niacin, and niacinamide. These changes in microbial composition corresponded to changes in rumen fermentation parameters, such as Firmicutes, which is closely related to carbohydrate fermentation, and the 16.6% higher Firmicutes abundance in HE heifers (51.29% vs. 43.99%) aligns with enhanced fiber degradation capacity under HE diets, as evidenced by the 69.3% increase in total VFA production (60.47 vs. 35.73 mmol/L). This microbial shift likely contributes to the improved energy status driving gonadotropin secretion (LH +17.6%, FSH +21.2%), suggesting that farmers could prioritize energy-dense TMR formulations during the 12–14 month pre-breeding window to accelerate reproductive readiness. However, it is important to note that while these correlations provide valuable insights into potential host-microbe interactions, they do not establish causality. Future research could explore these relationships further using controlled experimental approaches such as functional assays or gnotobiotic models to validate the roles of specific microbial taxa in host physiological processes.
A large number of different metabolites were identified by LC-MS/MS metabolomics analysis, and the main enrichment pathways involved pantothenic acid and coenzyme A biosynthesis, pyruvate metabolism, and inositol phosphate metabolism. At the same time, correlation analysis showed that the rumen microbial community was closely related to metabolites, and some microorganisms were also related to reproductive hormones, such as Treponema, which was positively correlated with PRL, FSH, and LH. This further reveals the complex connection between rumen microbes, metabolism, and the overall physiological state of cows (including reproductive function). Energy levels affect the metabolic activities of microorganisms by changing the rumen microecological environment, which may indirectly regulate physiological processes such as reproduction in cows.
Based on current feed costs in Inner Mongolia, the 15% improvement in first-service conception rate (70%vs.55%) would reduce the average number of services per pregnancy from 1.82 to 1.43. For a 500-cow herd, this translates to 195 fewer inseminations annually, while increasing annual calf yield by 75 heads. While this study provides novel insights into energy-driven microbiota-reproduction interactions, the sample size (n = 22/group) and short trial duration (21 days) warrant caution in extrapolating long-term impacts. Future work should validate these findings across larger herds and diverse geographical settings, particularly in arid regions with limited feed resources.