Trait | N | Mean | SD | Minimum | Maximum | CVa |
---|---|---|---|---|---|---|
Neutrophil (mg/dl) | 209 | 54.1 | 13.0 | 7 | 85 | 30.9 |
Lymphocyte (mg/dl) | 209 | 41.2 | 12.7 | 11 | 86 | 65.7 |
Monocyte (mg/dl) | 209 | 3.7 | 2.4 | 0 | 12 | 257.4 |
Eosinophil (mg/dl) | 209 | 0.3 | 0.9 | 0 | 8 | 427.6 |
Basophil (mg/dl) | 209 | 0.1 | 0.3 | 0 | 2 | 168.5 |
Atypical lymph (mg/dl) | 209 | 0.6 | 1.0 | 0 | 6 | 71.4 |
Immuno globulin (g/dl) | 217 | 2.0 | 0.4 | 1 | 4 | 24.0 |
Insulin (μIU/ml) | 217 | 7.0 | 5.6 | 2 | 35 | 15.4 |
Insulin-like growth factor-I (ng/ml) | 217 | 198.2 | 71.3 | 715 | 534 | 79.4 |
Trait/SNP markera | SNPb | SSC | Kbc | MAFd | −log10Pe | Estimatef | SEg | %σ2ph |
---|---|---|---|---|---|---|---|---|
Neutrophil | 42.09 | |||||||
INRA0001776 | [G/A] | 1 | 30,834 | 0.09 | 3.24 | 10.49 | 1.68 | 9.54 |
ALGA0023828 | [T/C] | 4 | 17,218 | 0.28 | 4.15 | −4.94 | 1.07 | 5.21 |
ASGA0021917 | [T/C] | 4 | 106,241 | 0.06 | 3.53 | 7.20 | 1.94 | 3.36 |
ALGA0047025 | [G/A] | 8 | 10,470 | 0.13 | 3.02 | −4.91 | 1.47 | 2.86 |
ASGA0050232 | [C/T] | 11 | 17,682 | 0.37 | 3.46 | 3.28 | 0.95 | 3.05 |
DRGA0011174 | [G/A] | 11 | 31,631 | 0.06 | 3.51 | 7.30 | 1.91 | 3.56 |
ALGA0063379 | [A/G] | 11 | 55,046 | 0.41 | 3.03 | 3.27 | 0.99 | 2.64 |
ALGA0067602 | [A/G] | 13 | 3,570 | 0.50 | 4.65 | 2.81 | 0.99 | 2.13 |
M1GA0019807 | [G/A] | 14 | 145,639 | 0.26 | 3.64 | −3.64 | 1.19 | 2.35 |
H3GA0045535 | [G/A] | 15 | 93,065 | 0.33 | 4.11 | 5.36 | 0.99 | 7.40 |
Lymphocyte | 28.91 | |||||||
ALGA0003271 | [T/C] | 1 | 42,786 | 0.10 | 5.57 | 7.73 | 1.82 | 5.85 |
ALGA0023828 | [T/C] | 4 | 17,218 | 0.28 | 4.52 | 4.93 | 1.21 | 5.39 |
H3GA0032363 | [C/T] | 11 | 55,220 | 0.30 | 3.05 | −3.59 | 1.19 | 3.08 |
ALGA0067602 | [A/G] | 13 | 3,570 | 0.50 | 4.80 | −5.02 | 1.11 | 7.09 |
M1GA0019807 | [G/A] | 14 | 145,639 | 0.26 | 3.14 | 4.28 | 1.31 | 3.37 |
ASGA0079719 | [A/G] | 18 | 24,680 | 0.21 | 3.31 | 4.67 | 1.32 | 4.14 |
Monocyte | 26.65 | |||||||
ALGA0024578 | [C/T] | 4 | 33,041 | 0.47 | 3.32 | 0.87 | 0.22 | 6.29 |
ASGA0023933 | [C/A] | 5 | 2,659 | 0.06 | 3.70 | −1.71 | 0.44 | 5.59 |
ALGA0037265 | [G/A] | 6 | 38,645 | 0.20 | 3.64 | 1.26 | 0.26 | 9.26 |
H3GA0055101 | [C/T] | 10 | 194 | 0.42 | 3.65 | 0.83 | 0.22 | 5.50 |
Eosinophil | 24.98 | |||||||
DRGA0003276 | [C/T] | 2 | 52,733 | 0.07 | 3.85 | −0.63 | 0.15 | 6.55 |
M1GA0006491 | [A/G] | 4 | 114,767 | 0.25 | 4.19 | 0.34 | 0.09 | 5.98 |
MARC0001377 | [G/A] | 11 | 39,551 | 0.39 | 3.56 | −0.33 | 0.08 | 7.11 |
ASGA0070239 | [C/G] | 15 | 70,085 | 0.08 | 3.41 | 0.52 | 0.15 | 5.34 |
Basophil | 26.82 | |||||||
INRA0004984 | [G/A] | 1 | 140,664 | 0.29 | 3.08 | −0.08 | 0.03 | 3.72 |
MARC0055620 | [C/T] | 2 | 69,303 | 0.06 | 5.84 | −0.22 | 0.05 | 5.80 |
ALGA0067658 | [G/A] | 13 | 4,270 | 0.10 | 3.21 | −0.17 | 0.04 | 6.45 |
ASGA0060375 | [T/G] | 14 | 865 | 0.33 | 3.02 | 0.08 | 0.03 | 4.40 |
MARC0052349 | [A/G] | 16 | 42,368 | 0.10 | 3.00 | 0.17 | 0.04 | 6.45 |
Atypical Lymph | 29.47 | |||||||
DIAS0003279 | [A/G] | 4 | 65,959 | 0.31 | 4.25 | −0.51 | 0.11 | 9.08 |
ALGA0029239 | [T/G] | 4 | 120,981 | 0.27 | 4.77 | 0.46 | 0.10 | 7.16 |
ALGA0033066 | [A/C] | 5 | 56,650 | 0.43 | 3.30 | 0.42 | 0.09 | 7.81 |
MARC0057515 | [G/A] | 7 | 108,793 | 0.13 | 3.78 | −0.51 | 0.13 | 5.42 |
Immuno globulin | 25.37 | |||||||
ASGA0030288 | [A/G] | 6 | 44,238 | 0.15 | 3.61 | −0.20 | 0.05 | 5.34 |
H3GA0021269 | [A/G] | 7 | 44,938 | 0.26 | 4.59 | 0.14 | 0.04 | 4.35 |
CASI0008911 | [G/A] | 13 | 129,859 | 0.17 | 3.58 | −0.20 | 0.05 | 5.52 |
ASGA0070402 | [A/G] | 15 | 76,723 | 0.40 | 3.02 | −0.12 | 0.04 | 3.98 |
ASGA0076724 | [A/C] | 17 | 32,707 | 0.48 | 4.17 | −0.15 | 0.03 | 6.18 |
Insulin | 40.66 | |||||||
DRGA0000138 | [C/T] | 1 | 11,545 | 0.08 | 4.68 | −3.67 | 0.74 | 6.49 |
ALGA0001580 | [C/T] | 1 | 16,659 | 0.23 | 3.22 | −1.74 | 0.50 | 3.34 |
ALGA0019935 | [G/A] | 3 | 35,523 | 0.23 | 6.43 | −2.07 | 0.51 | 4.38 |
ALGA0023517 | [C/T] | 4 | 13,640 | 0.46 | 3.90 | −2.05 | 0.48 | 5.32 |
M1GA0007246 | [T/C] | 5 | 1,569 | 0.47 | 3.16 | 1.39 | 0.40 | 3.43 |
ALGA0046513 | [T/G] | 8 | 4,535 | 0.46 | 3.98 | −1.94 | 0.41 | 5.94 |
MARC0091595 | [T/C] | 8 | 65,895 | 0.28 | 3.02 | 1.67 | 0.44 | 3.91 |
MARC0038074 | [A/G] | 9 | 1,979 | 0.38 | 4.07 | −1.63 | 0.47 | 3.51 |
ALGA0109641 | [T/C] | 11 | 28,168 | 0.15 | 3.02 | 1.35 | 0.65 | 1.26 |
ASGA0077323 | [T/C] | 17 | 42,488 | 0.49 | 3.16 | 1.40 | 0.40 | 3.07 |
Insulin-like growth factor-I | 28.09 | |||||||
ASGA0001642 | [C/T] | 1 | 18,567 | 0.32 | 3.17 | −20.94 | 6.81 | 3.67 |
ASGA0006375 | [A/G] | 1 | 213,459 | 0.49 | 5.46 | −24.79 | 6.51 | 5.49 |
ASGA0024563 | [A/G] | 5 | 9,250 | 0.06 | 3.46 | 47.87 | 12.62 | 5.36 |
ALGA0053141 | [C/T] | 9 | 29,004 | 0.06 | 3.84 | −41.32 | 11.04 | 4.02 |
MARC0020510 | [G/A] | 16 | 18,000 | 0.45 | 3.05 | −21.97 | 6.53 | 4.01 |
M1GA0023311 | [T/C] | 18 | 29,832 | 0.20 | 6.87 | 29.67 | 7.18 | 5.54 |
a,c SNP marker annotations and their positions were referred from the probes of the Illumina porcine 60 k chip that was mapped on the Sus scrofa 9.0.
e Negative logarithm of the comparison-wise p value of the test statistic against the null hypothesis of no SNP effect at the SNP position.