Al-Shahrour F, Diaz-Uriarte R, Dopazo J. 2004. FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes. Bioinformatics 20:578–580.
Amundson SA, Bittner M, Meltzer P, Trent J, Fornace AJ. 2001. Physiological function as regulation of large transcriptional programs: the cellular response to genotoxic stress. Comp Biochem Physiol B 129:703–710.
Barrow PA, Huggins MB, Lovell MA, Simpson JM. 1987. Observations on the pathogenesis of experimental
Salmonella typhimurium infection in chickens. Res Vet Sci 42:194–199.
Bourneuf E, Hérault F, Chicault C, Carré W, Assaf S, Monnier A, Mottier S, Lagarrigue S, Douaire M, Mosser J, Diot C. 2006. GeneChip analysis of differential gene expression in the liver of lean and fat chickens. Gene 372:162–170.
Bryan ED, Doyle MP. 1995. Health risks and consequences of
Salmonella and campylobacter jejuni in raw meat. J Food Prot 58:326–344.
Eckmann L, Smith JR, Housley MP, Dwinell MB, Kagnoff MF. 2000. Analysis by high density cDNA arrays of altered gene expression in human intestinal epithelial cells in response to infection with the invasive enteric bacteria
Salmonella. J Biol Chem 275:14084–14094.
Hillier LW, Miller W, Birney E, Warren W, Hardison RC, Ponting CP, Bork P, Burt DW, Groenen MA, Delany ME, Dodgson JB, Chinwalla AT, Cliften PF, Clifton SW, Delehaunty KD, Fronick C, Fulton RS, Graves TA, Kremitzki C, Layman D, Magrini V, McPherson JD, Miner TL, Minx P, Nash WE, Nhan MN, Nelson JO, Oddy LG, Pohl CS, Randall-Maher J, Smith SM, Wallis JW, Yang SP, Romanov MN, Rondelli CM, Paton B, Smith J, Morrice D, Daniels L, Tempest HG, Robertson L, Masabanda JS, Griffin DK, Vignal A, Fillon V, Jacobbson L, Kerje S, Andersson L, Crooijmans RP, Aerts J, vander Poel JJ, Ellegren H, Caldwell RB, Hubbard SJ, Grafham DV, Kierzek AM, McLaren SR, Overton IM, Arakawa H, Beattie KJ, Bezzubov Y, Boardman PE, Bonfield JK, Croning MD, Davies RM, Francis MD, Humphray SJ, Scott CE, Taylor RG, Tickle C, Brown WR, Rogers J, Buerstedde JM, Wilson SA, Stubbs L, Ovcharenko I, Gordon L, Lucas S, Miller MM, Inoko H, Shiina T, Kaufman J, Salomonsen J, Skjoedt K, Wong GK, Wang J, Liu B, Wang J, Yu J, Yang H, Nefedov M, Koriabine M, Dejong PJ, Goodstadt L, Webber C, Dickens NJ, Letunic I, Suyama M, Torrents D, von Mering C, Zdobnov EM, Makova K, Nekrutenko A, Elnitski L, Eswara P, King DC, Yang S, Tyekucheva S, Radakrishnan A, Harris RS, Chiaromonte F, Taylor J, He J, Rijnkels M, Griffiths-Jones S, Ureta-Vidal A, Hoffman MM, Severin J, Searle SM, Law AS, Speed D, Waddington D, Cheng Z, Tuzun E, Eichler E, Bao Z, Flicek P, Shteynberg DD, Brent MR, Bye JM, Huckle EJ, Chatterji S, Dewey C, Pachter L, Kouranov A, Mourelatos Z, Hatzigeorgiou AG, Paterson AH, Ivarie R, Brandstrom M, Axelsson E, Backstrom N, Berlin S, Webster MT, Pourquie O, Reymond A, Ucla C, Antonarakis SE, Long M, Emerson JJ, Betran E, Dupanloup I, Kaessmann H, Hinrichs AS, Bejerano G, Furey TS, Harte RA, Raney B, Siepel A, Kent WJ, Haussler D, Eyras E, Castelo R, Abril JF, Castellano S, Camara F, Parra G, Guigo R, Bourque G, Tesler G, Pevzner PA, Smit A, Fulton LA, Mardis ER, Wilson RK. 2004. Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432:695–716.
Guillot JF, Beaumont C, Bellatif F, Mouline C, Lantier F, Colin P, Protais J. 1995. Comparison of resistance of various poultry lines to infection by
Salmonella enteritidis. Vet Res 26:81–86.
Keestra AM, de Zoete MR, van Aubel RA, van Putten JP. 2008. Functional characterization of chicken TLR5 reveals species-specific recognition of flagellin. Mol Immunol 45:51298–307.
Kramer J, Malek M, Lamont SJ. 2003a. Association of twelve candidate gene polymorphisms and response to challenge with
Salmonella enteritidis in poultry. Anim Genet 34:339–348.
Lamont SJ. 1998. Impact of genetics on disease resistance. Poult Sci 77:1111–1118.
Lamont SJ, Kaiser MG, Liu W. 2002. Candidate genes for resistance to
Salmonella enteritidis colonization in chickens as detected in a novel genetic cross. Vet Immunol Immunopathol 87:423–428.
Liu W, Kaiser MG, Lamont SJ. 2003. Natural resistance-associated macrophage protein 1 gene polymorphisms and response to vaccine against or challenge with
Salmonella enteritidis in young chicks. Poult Sci 82:259–266.
Malek M, Lamont SJ. 2003. Association of INOS, TRAIL, TGF-beta2, TGF-beta3, and IgL genes with response to
Salmonella enteritidis in poultry. Genet. Sel. Evol 35:Suppl 1S99–S111.
Malek M, Hasenstein JR, Lamont SJ. 2004. Analysis of chicken TLR4, CD28, MIF, MD-2, and LITAF genes in a
Salmonella enteritidis resource population. Poult Sci 83:544–549.
Petrenko O, Ischenko I, Enrietto PJ. 1997. Characterization of changes in gene expression associated with malignant transformation by the NF-kappaB family member, v-Rel. Oncogene 15:141671–1680.
Rabsch W, Tschape H, Baumler AJ. 2001. Non-typhoidal salmonellosis: emerging problems. Microbes Infect 3:237–247.
Rosenberger CM, Pollard AJ, Finlay BB. 2001. Gene array technology to determine host responses to
Salmonella. Microbes Infect 3:1353–1360.
Sadeyen JR, Trotereau J, Velge P, Marly J, Beaumont C, Barrow PA, Bumstead N, Lalmanach AC. 2004.
Salmonella carrier state in chicken: comparison of expression of immune response genes between susceptible and resistant animals. Microbes Infect 6:1278–1286.
Sasaki E, Okamura H, Chikamune T, Kanai Y, Watanabe M, Naito M, Sakurai M. 1993. Cloning and expression of the chicken c-kit proto-oncogene. Gene 128:2257–261.
Suzuki S. 1994. Pathogenicity of
Salmonella enteritidis in poultry. Int J Food Microbiol 21:89–105.
Wicker T, Robertson JS, Schulze SR, Feltus FA, Magrini V, Morrison JA, Mardis ER, Wilson RK, Peterson DG, Paterson AH, Ivarie R. 2005. The repetitive landscape of the chicken genome. Genome Res 15:126–136.
Shin M, Noji S, Neubüser A, Yasugi S. 2006. FGF10 is required for cell proliferation and gland formation in the stomach epithelium of the chicken embryo. Dev Biol 294:111–23.
Swaggerty CL, Kogut MH, Ferro PJ, Rothwell L, Pevzner IY, Kaiser P. 2004. Differential cytokine mRNA expression in het-erophils isolated from
Salmonella-resistant and -susceptible chickens. Immunology 113:139–148.
Tucker RP, Hagios C, Chiquet-Ehrismann R, Lawler J. 1997.
In situ localization of thrombospondin-1 and thrombospondin-3 transcripts in the avian embryo. Dev Dyn 208:3326–337.
Withanage GS, Kaiser P, Wigley P, Powers C, Mastroeni P, Brooks H, Barrow P, Smith A, Maskell D, McConnell I. 2004. Rapid expression of chemokines and proinflammatory cytokines in newly hatched chickens infected with
Salmonella enterica serovar typhimurium. Infect Immun 72:2152–2159.
Zeng H, Carlson AQ, Guo Y, Yu Y, Collier Hyams LS, Madara JL, Gewirtz AT, Neish AS. 2003. Flagellin is the major proinflammatory determinant of enteropathogenic
Salmonella. J Immunol 171:3668–3674.