Anim Biosci > Volume 35(9); 2022 > Article |
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Locus | Physical localization | References | ||||||||
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Symbol | Name* | Protein type | BTA | BBU | OAR | CHI | SSC | ECA | VPA | |
AMELY | amelogenin, Y-linked | biomineral tissue development | - | - | - | - | Yp12-p13 | Yq14-q15 | - |
SSC: Quilter et al [54] ECA: Raudsepp et al [60] |
ANOS1Y ECA: KAL1 |
anosmin 1 | peptidase inhibitor activity | - | - | - | - | - | Yq14-q15 | - | ECA: Janeka et al [24] |
ATP6V0CY | ATPase, H + transporting, lysosomal 16kDa, V0 subunit c | membrane transporter | - | - | - | - | - | Yq14-q15 | - | ECA: Paria et al [62] |
BC1.2 | DNA segment | - | Yp13-p12 | - | - | - | - | - | - | BTA: Goldammer et al [43] |
BRY1 | bovine male specific repeat | - | Yp13 + Yp11-qter | - | - | - | - | - | - | BTA: Thomsen et al [41] |
BRY4.A | DNA segment | - | Yp11-q12 ter | - | - | - | - | - | - | BTA: Thomsen et al [41] |
BZY.2 | DNA segment | - | Yp11-q12 ter | - | - | - | - | - | - | BTA: Thomsen et al [41] |
CLY010 | DNA linear STS | - | - | - | - | - | - | Yq14 | - | ECA: Raudsepp et al [60] |
CLY018 | DNA linear STS | - | - | - | - | - | - | Yq14 | - | ECA: Raudsepp et al [60] |
CLY059 | DNA linear STS | - | - | - | - | - | - | Yq14 | - | ECA: Raudsepp et al [60] |
CLY074 | DNA linear STS | - | - | - | - | - | - | Yq14 | - | ECA: Raudsepp et al [60] |
CLY077 | DNA linear STS | - | - | - | - | - | - | Yq14 | - | ECA: Raudsepp et al [60] |
CUL4B ECA: CUL4BY |
cullin 4B ECA:Y-linked cullin 4B |
ubiquitin-protein transferase activity | - | - | - | - | - | Yq14 | - | ECA: Paria et al [62] |
DDX3Y (DBY) SSC: DBY ECA: DDX3Y |
DEAD-box helicase 3 Y-linked | nucleic acid binding | - | - | - | - | Yp12-p13 | Yq14 | - |
SSC: Quilter et al [54] ECA: Raudsepp et al [60] |
DYZ1 | DNA segment (DYZ-1) | - | Yp11–q11 | - | - | - | Yq12 | - | - |
BTA: Habermann et al [46] SSC: Quilter et al [54] |
DYZ10 BTA-BBU-OAR-CHI: IDVGA50 |
Microsatellite | - | Yp12.1-q12.3 | Yq11-q1.10 | Yp11-q11 | Yp11-q11 | - | - | - | BTA-BBU-OAR-CHI: Di Meo et al [45] |
EIF1AY | translation initiation factor 1A Y | translation initiation factor activity | - | - | - | - | - | Yq14 | - | ECA: Paria et al [62] |
EIF2S3 SSC-ECA: EIF2s3Y |
eukaryotic translation initiation factor 2 subunit gamma | translation factor activity, RNA binding | - | - | - | - | Yp12-p13 | Yq14 | - |
SSC: Quilter et al [54] ECA: Paria et al [62] |
EIF3CY | eukaryotic translation initiation factor, subunit C on Y | formation of cytoplasmic translation initiation complex | - | - | - | - | - | Yq14 | - | ECA: Paria et al [62] |
ETSTY1–5 | equus testis-specific transcript Y1–5 | - | - | - | - | - | - | Yq14 | - | ECA: Paria et al [62] |
ETSTY6 | equus testis-specific transcript Y6 | - | - | - | - | - | - | Yq13 (painting) | - | ECA: Paria et al [62] |
ETSTY7 | equus testis-specific transcript Y7 | - | - | - | - | - | - | Yq13 (painting) | - | ECA: Paria et al [62] |
ETY1,4 | Equus (transcript) Y1,4 | - | - | - | - | - | - | Yq14 | - | ECA: Paria et al [62] |
ETY2 | Equus (transcript) Y2 | - | - | - | - | - | - | Yq14 | - | ECA: Paria et al [62] |
ETY3 | Equus (transcript) Y3 | - | - | - | - | - | - | Yq13 (painting) | - | ECA: Paria et al [62] |
FBNY | DNA fragment | - | Yq12-qter (painting) | - | - | - | - | - | - | BTA: Weikard et al [44] |
HSFY1 | heat shock transcription factor Y-linked 1 | transcriptional activators | Yp11-q12ter (painting) | - | - | - | - | - | - | BTA: Hamilton et al [48] |
HSFY2 | heat shock transcription factor Y-linked 2 | transcriptional activators | Yp11-q12ter (painting) | - | - | - | - | - | - | BTA: Hamilton et al [48] |
KDM5D ECA: JARID1D |
lysine demethylase 5D | histone demethylase | - | - | - | - | - | Yq14 | - | ECA: Raudsepp et al [60] |
MAP3K7/IP3Y | mitogen-activated protein kinase 7 interacting protein 3 on Y | protein kinase | - | - | - | - | - | Yq14 | - | ECA: Paria et al [62] |
MT-ND1Y | miochondrially encoded NADH dehydrogenase1 on Y | catalytic activity | - | - | - | - | - | Yq14 | - | ECA: Paria et al [62] |
NLGN4Y | neuroligin 4 Y-linked | putative neuronal cell surface protein involved in cell-cell-interactions. | - | - | - | - | - | Yq14 | - | ECA: Paria et al [62] |
OY1.1 | protein coding | - | Yp13 + Yp11-qter | - | - | - | - | - | - | BTA: Thomsen et al [41] |
OY11.1 | protein coding | - | Yp11-q12 ter | - | - | - | - | - | - | BTA: Thomsen et al [41] |
RBMY | RNA binding motif protein Y-linked | binding protein | - | - | - | - | - | Yq14 | - | ECA: Paria et al [62] |
RFX5Y | regulatory factor X5 on Y | DNA-binding transcription activator activity | - | - | - | - | - | Yq14 | - | ECA: Paria et al [62] |
RPS3AY | ribosomal protein S3A | ribosomal protein | - | - | - | - | - | Yq14 | - | ECA: Paria et al [62] |
SH2-A-1 | DNA linear STS | - | - | - | - | - | - | Yq14 | - | ECA: Raudsepp et al [60] |
SH3-B-6 | DNA linear STS | - | - | - | - | - | - | Yq14 | - | ECA: Raudsepp et al [60] |
SH3-B-7 | DNA linear STS | - | - | - | - | - | - | Yq14 | - | ECA: Raudsepp et al [60] |
SRY | sex determining region Y | transcriptional regulator | Yq12.3 | Yq17 | Yq12 | Yq12 | Yp12-p13 | Yq14 | - |
BTA/BBU/OAR/CHI: Di Meo et al [45] SSC: Yang et al [100] ECA: Raudsepp et al [60] |
STSP1 ECA: STS-Y |
steroid sulfatase (microsomal) pseudogene 1 | protein kinase, sulfuric ester hydrolase activity | - | - | - | - | - | Yq14 | - | ECA: Paria et al [62] |
TBL1Y | transducin beta like 1Y-linked | transcription activation mediated by nuclear receptors | - | - | - | - | - | Yq14 | - | ECA: Paria et al [62] |
TMSB4Y | thymosin beta 4 Y-linked | actin monomer binding | - | - | - | - | - | Yq14 | - | ECA: Paria et al [62] |
TSPY1 BTA-OAR-CHI-SSC-ECA: TSPY |
testis specific protein Y-linked 1 | nucleosome assembly protein | Yp13-p11 (painting) | - | Yp1.3-p1.2 (painting) | Yp1.3-p1.2 (painting) | Yp11-p12 | Yq14 | - |
BTA/OAR/CHI: Hamilton et al [47]; Vogel et al [42]; Quilter et al [54] ECA: Raudsepp et al [60] |
TXLNGY ECA: CYorf15 |
taxilin gamma pseudogene, Y-linked | syntaxin binding | - | - | - | - | - | Yq14 | - | ECA: Paria et al [62] |
UBA1 SSC-ECA: UBE1Y |
ubiquitin-like modifier-activating enzyme 1 | ubiquitin activating enzyme activity | - | - | - | - | Yp11-p12 | Yq14 | - |
SSC: Quilter et al [54] ECA: Paria et al [62] |
UMN0301 | microsatellite | - | Yp12.1-q11 | - | - | - | - | - | - | BTA: Di Meo et al [45] |
UMN0304 | microsatellite | - | Yp12.1-q11 | Yq11-q1.10 | Yp11-q12 | Yp11-q12 | - | - | - | BTA/BBU/OAR/CHI: Di Meo et al [45] |
UMN0504 | microsatellite | - | Yp13-p12.2 | Yq21-q22 | - | - | - | - | - | BTA/BBU: Di Meo et al [45] |
USP9Y | ubiquitin specific peptidase 9 Y-linked | ubiquitin-protein or polyubiquitin hydrolase | - | - | - | - | Yp12-p13 | Yq14 | - |
SSC: Quilter et al [54] ECA: Raudsepp et al [60] |
UTY | ubiquitously transcribed tetratricopeptide repeat containing, Y-linked | protein-protein interactions | - | - | - | - | Yp12-p13 | Yq14-q15 | - |
SSC: Quilter et al [54] ECA: Raudsepp et al [60] |
Y2B17/YE1 | DNA linear STS | - | - | - | - | - | - | Yq14 | - | ECA: Raudsepp et al [60] |
Y3B1 | DNA linear STS | - | - | - | - | - | - | Yq14 | - | ECA: Raudsepp et al [60] |
Y3B12 | DNA linear STS | - | - | - | - | - | - | Yq14 | - | ECA: Raudsepp et al [60] |
Y3B8 | DNA linear STS | - | - | - | - | - | - | Yq14 | - | ECA: Raudsepp et al [60] |
YIR2 | inverted repeat 2Y | - | - | - | - | - | - | Yq14 | - | ECA: Paria et al [62] |
YM2 | DNA linear STS | - | - | - | - | - | - | Yq14 | - | ECA: Raudsepp et al [60] |
ZFY | zinc finger protein Y-linked | DNA-binding transcription factor activity | Yp12.2 | Yq110-q21 | Yp1.2 | Yp1.2 | Yp12-p13 | Yq14-q15 | - |
BTA/BBU/OAR/CHI: Di Meo et al [45] SSC: Quilter et al [54] ECA: Raudsepp et al [60] |
ZNF33bY | zinc finger protein 33b on Y | regulation of transcription | - | - | - | - | - | Yq13 (painting) | - | ECA: Paria et al [62] |
λES6.0 | DNA segment | - | Yp12-p11 | - | - | - | - | - | - | BTA: Goldammer et al [43] |
TOTAL LOCUS = 89 | BTA N = 18 | BBU N = 5 | OAR N = 5 | CHI N = 5 | SSC N = 10 | ECA N = 46 | VPA N = 0 |
* The reported gene names follow the standards of the human gene nomenclature HGNC (Tweedie S, Braschi B, Gray KA, Jones TEM, Seal RL, Yates B, Bruford EA. Genenames.org: the HGNC and VGNC resources in 2021. Nucleic Acids Res. PMID: 33152070 PMCID: PMC7779007 DOI:10.1093/nar/gkaa980).
Locus | Physical localization | References | ||||||||
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Symbol | Name* | Protein type | BTA | BBU | OAR | CHI | SSC | ECA | VPA | |
AKAP17A ECA: SFRS17A |
A-kinase anchoring protein 17A | A-kinase anchor protein 17A | - | - | - | - | - | Xp25tel/Yq15tel | - | ECA: Raudsepp and Chowdhary [63] |
ANOS1 BTA/OAR/CHI/ SSC/VPA: KAL1 |
anosmin 1 | serine-type endopeptidase inhibitor activity | Xq43/Yp12.2-p13 | - | Xp12/Yp12-p13 | Xp12/Yp12-p13 | Xp22.2/Yptel | - | Xp16/Yq11 |
BTA/OAR/CHI: Das et al [39] SSC: Das et al [55] VPA: Avila et al [74] |
ARSD | arylsulfatase D | arylsulfatase D precursor | Xq43/Yp12.2-p13 | - | Xp12/Yp12-p13 | Xp12/Yp12-p13 | - | Xp25tel/Yq15tel | - |
BTA/OAR/CHI: Das et al [39] ECA: Raudsepp and Chowdhary [63] |
ARSL BTA/OAR/CHI/ECA: ARSE |
arylsulfatase L | arylsulfatase L precursor | Xq43/Yp12.2-p13 | - | Xp12/Yp12-p13 | Xp12/Yp12-p13 | - | Xp25tel/Yq15tel | - |
BTA/OAR/CHI: Das et al [39]; ECA: Raudsepp and Chowdhary [63] |
ARSF | arylsulfatase F | arylsulfatase F precursor | Xq43/Yp12.2-p13 | - | Xp12/Yp12-p13 | Xp12/Yp12-p13 | Xp24/Yp13 | Xp25tel/Yq15tel | Xp16/Yq11 |
BTA/OAR/CHI: Das et al [39]; SSC: Das et al [55] ECA: Raudsepp and Chowdhary [63] VPA: Avila et al [74] |
ARSH | arylsulfatase family member H | arylsulfatase H precursor | Xq43/Yp12.2-p13 | - | Xp12/Yp12-p13 | Xp12/Yp12-p13 | - | Xp25tel/Yq15tel | - |
BTA/OAR/CHI: Das et al [39]; ECA: Raudsepp and Chowdhary [63] |
ASMT | acetylserotonin O-methyltransferase | methyltransferase activity | - | - | - | - | - | Xp25tel/Yq15tel | - | ECA: Raudsepp and Chowdhary, [63] |
ASMTL | acetylserotonin O-methyltransferase like | O-methyltransferase activity | Xq43/Yp12.2-p13 | Xq46/Yq21-q22 | Xp12/Yp12-p13 | Xp12/Yp12-p13 | - | - | - |
BTA/OAR/CHI: Das et al [39] BBU: Perucatti et al [52] |
CD99 | CD99 molecule (Xg blood group) | membrane glycoprotein | Xq43/Yp12.2-p13 | - | Xp12/Yp12-p13 | Xp12/Yp12-p13 | - | Xp25tel/Yq15tel | - |
BTA/OAR/CHI: Das et al [39] ECA: Raudsepp and Chowdhary [63] |
CLCN4 | chloride voltage-gated channel 4 | membrane protein | - | - | - | - | - | - | Xp16/Yq11 | VPA: Avila et al [74] |
CRLF2 | cytokine receptor like factor 2 | membrane receptor | Xq43/Yp12.2-p13 | - | Xp12/Yp12-p13 | Xp12/Yp12-p13 | Xp24/Yp13 | Xp25tel/Yq15tel | - |
BTA/OAR/CHI: Das et al [39] SSC: Das et al [55] ECA: Raudsepp and Chowdhary [63] |
CSF2RA | colony stimulating factor 2 receptor subunit alpha | membrane receptor | Xq43/Yp12.2-p13 | - | Xp12/Yp12-p13 | - | Xp24/Yp13 | - | Xp16/Yq11 |
BTA/OAR: Das et al [39]; Toder et al [34] SSC: Das et al [55]; VPA: Avila et al [74] |
DHRSX | dehydrogenase/reductase X-linked | oxidoreductase activity | - | - | - | - | - | Xp25tel/Yq15tel | - | ECA: Raudsepp and Chowdhary [63] |
DU171056 | BES | - | Xq43.1/Yp12.2-p13 | Xq46/Yq21-q22 | Xp12/Yp12-p13 | - | - | - | - | BTA/BBU/OAR: Perucatti et al [52] |
DXYS3 (TGLA325) | DNA segment | - | Xq43.1q43.2/Yq12.2-q13 | Xq46q47/Yq22 | Xp12/Yp12-p13 | Xp11-p14/Yp12-p13 | - | - | - | BTA/BBU/OAR/CHI: Iannuzzi et al [51]; Di Meo et al [45] Piumi et al [50] |
DXYS4 (IOZARA1489) | DNA segment | - | Xq43.1/Yp12.2 | Xq46-q47 | - | - | - | - | - | BTA/BBU: Prakash et al [49] |
EST BE750429 | DNA segment | - | Xq43.1/Yp12.2 | Xq46–47/Yq21-q22 | Xp12/Yp12 | - | - | - | - | BTA/BBU/OAR: De Lorenzi et al [53] |
GPR143 | G protein-coupled receptor 143 pseudogene | G protein-coupled receptor activity | Xq43/Yp12.2-p13 | - | Xp12/Yp12-p13 | Xp12/Yp12-p13 | Xp24/Yp13 | - | Xp16/Yq11 |
BTA/OAR/CHI: Das et al [39]; SSC: Das et al [55] VPA: Avila et al [74] |
GTPBP6 | GTP binding protein 6 (putative) | metal ion binding | - | - | - | - | - | Xp25tel/Yq15tel | - | ECA: Raudsepp and Chowdhary [63] |
GYG2 | glycogenin 2 | glycosyltransferase activity | Xq43/Yp12.2-p13 | - | Xp12/Yp12-p13 | Xp12/Yp12-p13 | - | Xp25tel/Yq15tel | - |
BTA/OAR/CHI: Das et al [39]; ECA: Raudsepp and Chowdhary [63] |
IL3RA | interleukin 3 receptor subunit alpha | cytokine receptor activity | Xq43/Yp12.2-p13 | - | Xp12/Yp12-p13 | Xp12/Yp12-p13 | - | - | - | BTA/OAR/CHI: Das et al [39] |
MID1 | midline 1 | zinc ion binding | - | - | - | - | - | - | Xp16/Yq11 | VPA: Avila et al [74] |
MXRA5 | matrix remodeling associated 5 | protein peptidase inhibitor | Xq43/Yp12.2-p13 | - | Xp12/Yp12-p13 | Xp12/Yp12-p13 | Xp24/Yp13 | Xp25tel/Yq15tel | - |
BTA/OAR/CHI: Das et al [39]; SSC: Das et al [55] ECA: Raudsepp and Chowdhary [63] |
NLGN4X BTA/OAR/CHI: NLGN4 |
neuroligin 4 X-linked | hydrolases | Xq43/Yp12.2-p13 | - | Xp12/Yp12-p13 | Xp12/Yp12-p13 | - | - | - | BTA/OAR/CHI: Das et al [39] |
OBP | odorant binding protein (OBP porcine is pool of isoforms) | phosphoprotein binding | - | - | - | - | Xp24/Yp13 | - | - | SSC: Skinner et al [56] |
PLCXD1 | phosphatidylinositol specific phospholipase C X domain containing 1 | phosphoric diester hydrolase activity | - | - | - | - | - | Xp25tel/Yq15tel | - | ECA: Raudsepp and Chowdhary [63] |
PNPLA4 | patatin like phospholipase domain containing 4 | triglyceride lipase activity | Xq43/Yp12.2-p13 | - | Xp12/Yp12-p13 | Xp12/Yp12-p13 | Xp24/Yp13 | - | Xp16/Yq11 |
BTA/OAR/CHI: Das et al [39] SSC: Chen et al [91]; Das et al [55] VPA: Avila et al [74] |
PPP2R3B | protein phosphatase 2 regulatory subunit B″beta | protein kinase binding | Xq43/Yp12.2-p13 | - | Xp12/Yp12-p13 | Xp12/Yp12-p13 | - | Xp25tel/Yq15tel | - |
BTA/OAR/CHI: Das et al [39]; ECA: Raudsepp and Chowdhary [63] |
PRKXY | protein kinase X-linked | cAMP-dependent protein kinase activity | Xq43/Yp12.2-p13 | - | Xp12/Yp12-p13 | Xp12/Yp12-p13 | Xp24/Yp13 | Xp25tel/Yq15tel | - |
BTA/OAR/CHI: Das et al [39]; SSC: Das et al [55] ECA: Raudsepp and Chowdhary [63] |
PUDP SSC: HDHD1 |
pseudouridine 5'-phosphatase | phosphatase protein | - | - | - | - | Xp24/Yp13 | - | - | SSC: Das et al [55] |
SHOX | short stature homeobox | DNA-binding transcription factor activity | - | - | - | - | Xp24/Yp13 | - | - | SSC: Skinner et al [56] |
SHROOM2 | shroom family member 2 | actin filament binding | - | - | - | - | Xp24/Yp13 | - | Xp16/Yq11 |
SSC: Das et al [55] VPA: Avila et al [74] |
SLC25A6 | solute carrier family 25 member 6 | carrier protein ADP/ATP | Xq42-q43.2/Yq12.2-q13 | Xq46–47/Yq21–22 | Xp12/Yp12-p13 | Xp12/Yp12-p13 | Xp24/Yp13 | Xp25tel/Yq15tel | - |
BTA/BBU/OAR/CHI: Das et al [39]; Di Meo et al [45] SSC: Das et al [55] ECA: Raudsepp and Chowdhary [63] |
STS | steroid sulfatase | sulfuric ester hydrolase activity | Xq42-q43.2/Yq12.2-q13 | - | Xp12/Yp12-p13 | - | Xp24/Yp13 | - | Xp16/Yq11 |
BTA: Das et al [39]; OAR: Toder et al [34] SSC: Das et al [55] VPA: Avila et al [74] |
SW949 | microsatellite | - | - | - | - | - | Xp24/Yp13 | - | - | SSC: Das et al [55] |
TBL1X | transducin beta like 1 X-linked | transcription corepressor activity | Xq43.1/Yp12.2 | Xq46–47/Yq21-q22 | Xp12/Yp12 | - | Xp24/Yp13 | - | - |
BTA/BBU/OAR: De Lorenzi et al [53] SSC: Das et al [55] |
WWC3 | WWC family member 3 | kinase binding | - | - | - | - | - | - | Xp16/Yq11 | VPA: Avila et al [74] |
XG | Xg glycoprotein (Xg blood group) | glycoprotein plasma membrane | - | - | - | - | - | Xp25tel/Yq15tel | - | ECA: Raudsepp and Chowdhary [63] |
ZBED1 | zinc finger BED-type containing 1 | DNA-binding transcription protein | Xq43/Yp12.2-p13 | - | Xp12/Yp12-p13 | Xp12/Yp12-p13 | - | Xp25tel/Yq15tel | - |
BTA/OAR/CHI: Das et al [39]; ECA: Raudsepp and Chowdhary [63] |
Total LOCUS | BTA N = 25 | BBU N = 7 | OAR N= 24 | CHI N = 19 | SSC N = 16 | ECA N = 18 | VPA N = 10 |
* The reported gene names follow the standards of the human gene nomenclature HGNC (Tweedie S, Braschi B, Gray KA, Jones TEM, Seal RL, Yates B, Bruford EA. Genenames.org: the HGNC and VGNC resources in 2021. Nucleic Acids Res. PMID: 33152070 PMCID: PMC7779007 DOI:10.1093/nar/gkaa980).