Anim Biosci > Volume 33(2); 2020 > Article |
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Candidate genes | Chr | Physical position | Group11) | Group21) | Microarray | |||
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AF1 | AF2 | AF1 | AF2 | p-value | Log2(FC) | |||
TCF7 | 2 | 142047175 | 0 | 1 | 0.488 | 0.512 | NF | NF |
EPAS1 | 3 | 100164175 | 0.024 | 0.976 | 0.694 | 0.306 | 3.38E-03 | 1.32 |
TGFBR3 | 4 | 136718160 | 0.018 | 0.982 | 0.806 | 0.194 | NF | NF |
MMP2 | 6 | 27552563 | 0.003 | 0.997 | 0.5 | 0.5 | NF | NF |
AXL | 6 | 44979578 | 0.324 | 0.676 | 0.997 | 0.003 | 7.32E-01 | 0.08 |
SPDEF | 7 | 35242328 | 0.128 | 0.872 | 0.8 | 0.2 | NF | NF |
CYP1A1 | 7 | 63474840 | 0.003 | 0.997 | 0.741 | 0.259 | NF | NF |
CYP1A2 | 7 | 63474840 | 0.003 | 0.997 | 0.741 | 0.259 | NF | NF |
CXCL2 | 8 | 74284832 | 0 | 1 | 0.529 | 0.471 | 3.10E-06 | 3.32 |
TLR2 | 8 | 79818077 | 0.04 | 0.96 | 0.871 | 0.129 | 2.53E-03 | 1.15 |
CCL11 | 12 | 42446570 | 0.476 | 0.524 | 0 | 1 | NF | NF |
CTNNB1 | 13 | 27684730 | 0 | 1 | 0.512 | 0.488 | 3.97E-01 | 0.24 |
IL7R | 16 | 22326963 | 0.318 | 0.682 | 1 | 0 | 1.36E-04 | 3.08 |
WNT2 | 18 | 30813337 | 0.11 | 0.89 | 0.771 | 0.229 | NF | NF |
AF, allele frequency; FC, fold change; NF, not found; TCF7, transcription factor 7; EPAS1, endothelial PAS domain protein 1; TGFBR3, transforming growth factor beta receptor 3; MMP2, matrix metallopeptidase 2; AXL, AXL receptor tyrosine kinase; SPDEF, SAM pointed domain containing ETS transcription factor; CYP1A1, cytochrome P450 1A1; CXCL2, C-X-C motif chemokine ligand 2; TLR2, toll-like receptor 2; CCL11, C-C motif chemokine ligand 11; CTNNB1, catenin beta 1; IL7R, interleukin 7 receptor; WNT2, Wnt family member 2.
LD, linkage disequilibrium; SNPs, single nucleotide polymorphisms; MMP2, matrix metallopeptidase 2; LPCAT2, lysophosphatidylcholine acyltransferase 2; SLC6A2, solute carrier family 6 member 2; AXL, AXL receptor tyrosine kinase; CCDC97, coiled-coil domain containing 97; HNRNPUL1, heterogeneous nuclear ribonucleoprotein U like 1; MEGF8, multiple EGF like domains 8; GSK3A, glycogen synthase kinase 3 alpha; CYP2B6, cytochrome P450 family 2 subfamily B member 6; IRGQ, immunity related GTPase Q; XRCC1, X-ray repair cross complementing 1; ZNF576, zinc finger protein 576; PLAUR, plasminogen activator, urokinase receptor; CADM4, cell adhesion molecule 4; SPDEF, SAM pointed domain containing ETS transcription factor; ANKS1A, ankyrin repeat and sterile alpha motif domain containing 1A; CLPSL2, colipase like 2; ARMC12, armadillo repeat containing 12.