BTA | Number of SNPsa | %b | Average interval size (kb) | Standard deviation (kb) | Total distance (kb)c |
---|---|---|---|---|---|
1 | 19,829 | 50.3 | 8.0 | 10.2 | 158,300 |
2 | 17,110 | 50.8 | 8.0 | 10.9 | 136,520 |
3 | 14,912 | 51.8 | 8.1 | 11.4 | 121,351 |
4 | 16,534 | 52.0 | 7.3 | 10.1 | 120,629 |
5 | 13,765 | 51.6 | 8.8 | 13.5 | 121,164 |
6 | 15,347 | 54.0 | 7.8 | 14.6 | 119,272 |
7 | 13,508 | 50.8 | 8.3 | 17.1 | 112,623 |
8 | 14,206 | 50.5 | 8.0 | 11.2 | 113,334 |
9 | 14,001 | 51.7 | 7.5 | 10.1 | 105,584 |
10 | 14,433 | 50.8 | 7.2 | 11.2 | 104,236 |
11 | 13,015 | 48.9 | 8.2 | 15.3 | 107,190 |
12 | 11,916 | 52.4 | 7.6 | 20.2 | 91,116 |
13 | 10,239 | 50.7 | 8.2 | 12.9 | 84,132 |
14 | 9,221 | 50.0 | 9.1 | 14.0 | 83,465 |
15 | 11,154 | 51.3 | 7.6 | 10.9 | 85,173 |
16 | 9,753 | 49.1 | 8.3 | 14.7 | 81,403 |
17 | 8,500 | 48.2 | 8.8 | 16.0 | 74,634 |
18 | 7,821 | 49.7 | 8.4 | 16.0 | 65,898 |
19 | 5,987 | 44.5 | 10.7 | 17.6 | 63,915 |
20 | 9,553 | 52.2 | 7.5 | 10.4 | 71,762 |
21 | 9,255 | 50.4 | 7.7 | 13.4 | 71,461 |
22 | 7,917 | 52.1 | 7.7 | 12.8 | 61,277 |
23 | 9,746 | 55.3 | 5.4 | 9.7 | 52,491 |
24 | 8,796 | 51.4 | 7.1 | 10.2 | 62,411 |
25 | 6,082 | 53.2 | 7.0 | 16.9 | 42,764 |
26 | 7,628 | 50.1 | 6.7 | 10.3 | 50,830 |
27 | 7,629 | 51.8 | 6.0 | 11.0 | 45,400 |
28 | 7,161 | 52.4 | 6.5 | 9.5 | 46,206 |
29 | 7,095 | 50.6 | 7.2 | 14.3 | 51,072 |
X | 0 | 0 | - | - | - |
Pseudo | 47 | 17.1 | 3,227.5 | 11,526.1 | 148,466 |
Total: 322,160 | Mean: 49.7 | Mean: 8.2 | Mean: 14.4 | Total: 2,654,080 |
Trait/SNP maker | SNPa | BTA | Position (bp) | Estimateb | SE | −log10Pc | % σ2pd |
---|---|---|---|---|---|---|---|
Aroma | 30.7 | ||||||
AX-22028107 | [A/G] | 2 | 6,300,508 | −0.49 | 0.18 | 1.74 | |
AX-22310754 | [A/G] | 2 | 80,382,416 | −0.36 | 0.18 | 1.30 | |
AX-22504510 | [A/G] | 2 | 128,694,058 | 0.60 | 0.17 | 2.34 | |
AX-25044518 | [T/C] | 3 | 39,776,491 | 0.34 | 0.12 | 2.12 | |
AX-25252417 | [T/C] | 3 | 94,943,252 | 0.31 | 0.11 | 1.34 | |
AX-25283035 | [T/C] | 3 | 102,534,659 | 0.22 | 0.12 | 1.30 | |
AX-26832968 | [A/G] | 7 | 14,142,752 | 0.30 | 0.10 | 2.24 | |
AX-26932949 | [T/C] | 7 | 38,591,573 | 0.29 | 0.12 | 1.35 | |
AX-27236015 | [A/G] | 8 | 2,138,386 | −0.25 | 0.13 | 1.63 | |
AX-18755438 | [T/C] | 10 | 35,548,753 | 0.19 | 0.10 | 1.32 | |
AX-20705361 | [C/G] | 15 | 48,461,742 | −0.56 | 0.21 | 1.43 | |
AX-21567050 | [A/C] | 18 | 22,783,742 | 0.50 | 0.18 | 1.70 | |
AX-23995926 | [A/G] | 25 | 25,630,340 | −0.24 | 0.09 | 1.74 | |
AX-24413580 | [T/C] | 27 | 30,873,451 | 0.37 | 0.10 | 1.52 | |
Color | 18.4 | ||||||
AX-18487566 | [A/G] | 1 | 129,176,475 | 0.13 | 0.08 | 1.38 | |
AX-27133183 | [G/A] | 7 | 88,729,387 | 0.18 | 0.07 | 1.71 | |
AX-27889364 | [A/G] | 9 | 58,658,454 | 0.23 | 0.09 | 2.01 | |
AX-19559065 | [A/C] | 12 | 20,239,702 | −0.20 | 0.07 | 2.30 | |
AX-19613598 | [T/C] | 12 | 33,269,516 | −0.14 | 0.07 | 1.41 | |
AX-21113987 | [G/A] | 16 | 63,613,670 | −0.13 | 0.06 | 1.39 | |
AX-21117675 | [G/A] | 16 | 64,372,169 | 0.16 | 0.06 | 1.92 | |
AX-21733351 | [T/C] | 18 | 61,989,245 | 0.18 | 0.08 | 1.64 | |
Juiciness | 25.6 | ||||||
AX-18342275 | [C/T] | 1 | 90,088,898 | −0.55 | 0.23 | 1.31 | |
AX-22292276 | [A/G] | 2 | 75,388,033 | 0.36 | 0.18 | 1.32 | |
AX-26352284 | [T/C] | 6 | 7,549,442 | 0.66 | 0.23 | 1.75 | |
AX-26703353 | [T/C] | 6 | 101,662,167 | 0.42 | 0.11 | 2.61 | |
AX-26742891 | [C/T] | 6 | 110,948,656 | 0.32 | 0.11 | 1.83 | |
AX-27728564 | [A/G] | 9 | 15,441,609 | 0.35 | 0.19 | 1.33 | |
AX-19104043 | [C/A] | 11 | 15,600,024 | 0.32 | 0.15 | 1.52 | |
AX-22572250 | [G/A] | 20 | 6,155,235 | 0.31 | 0.11 | 2.25 | |
AX-23535517 | [C/G] | 23 | 33,495,661 | 0.40 | 0.19 | 1.84 | |
AX-24016864 | [T/G] | 25 | 30,386,628 | 0.30 | 0.14 | 1.74 | |
Palatability | 23.5 | ||||||
AX-26703353 | [T/C] | 6 | 101,662,167 | 0.30 | 0.08 | 4.30 | |
AX-26742891 | [C/T] | 6 | 110,948,656 | 0.18 | 0.08 | 2.01 | |
AX-27056668 | [A/G] | 7 | 69,048,276 | 0.18 | 0.08 | 1.53 | |
AX-18624743 | [A/G] | 10 | 3,581,326 | −0.40 | 0.19 | 1.64 | |
AX-20558433 | [C/T] | 15 | 13,361,044 | −0.23 | 0.09 | 1.65 | |
AX-21807591 | [T/C] | 19 | 16,225,261 | −0.89 | 0.38 | 1.81 | |
AX-21807600 | [A/G] | 19 | 16,226,761 | −1.10 | 0.39 | 1.67 | |
AX-23847051 | [T/C] | 24 | 54,680,656 | −0.33 | 0.12 | 1.56 | |
AX-23856093 | [C/T] | 24 | 56,668,495 | 0.25 | 0.12 | 1.39 | |
Tenderness | 28.1 | ||||||
AX-22345506 | [T/C] | 2 | 90,197,319 | 0.20 | 0.11 | 1.70 | |
AX-26703353 | [T/C] | 6 | 101,662,167 | 0.23 | 0.11 | 2.63 | |
AX-26742891 | [C/T] | 6 | 110,948,656 | 0.30 | 0.10 | 1.92 | |
AX-27646347 | [C/T] | 8 | 107,014,241 | −0.20 | 0.10 | 1.33 | |
AX-27809598 | [T/C] | 9 | 36,731,857 | 0.18 | 0.11 | 1.49 | |
AX-18624743 | [A/G] | 10 | 3,581,326 | −0.51 | 0.23 | 1.77 | |
AX-19181219 | [C/T] | 11 | 35,096,159 | −0.21 | 0.10 | 1.43 | |
AX-19331523 | [G/A] | 11 | 73,007,955 | −0.21 | 0.10 | 1.52 | |
AX-22865134 | [A/G] | 21 | 8,651,267 | 0.27 | 0.11 | 2.36 | |
AX-24194530 | [C/T] | 26 | 30,461,302 | 0.21 | 0.10 | 1.38 | |
AX-24734214 | [A/C] | 29 | 15,421,430 | −0.24 | 0.11 | 1.96 |
Bina | Interval size between SNP pairs | Whole genome level | |
---|---|---|---|
|
|||
Average r2 | SD | ||
1 | 0–1 kbp | 0.320 | 0.327 |
2 | 1–10 kbp | 0.244 | 0.284 |
3 | 10–20 kbp | 0.178 | 0.232 |
4 | 20–30 kbp | 0.142 | 0.198 |
5 | 30–40 kbp | 0.169 | 0.187 |
6 | 40–50 kbp | 0.176 | 0.194 |
7 | 50–60 kbp | 0.157 | 0.178 |
8 | 60–70 kbp | 0.082 | 0.132 |
9 | 70–80 kbp | 0.177 | 0.194 |
10 | 80–90 kbp | 0.067 | 0.113 |
11 | 90–100 kbp | 0.160 | 0.182 |
12 | 100–200 kbp | 0.174 | 0.193 |
13 | ~300 kbp | 0.164 | 0.183 |
14 | ~400 kbp | 0.023 | 0.041 |
15 | ~500 kbp | 0.020 | 0.035 |
16 | ~600 kbp | 0.019 | 0.031 |
17 | ~700 kbp | 0.018 | 0.029 |
18 | ~800 kbp | 0.017 | 0.028 |
19 | ~900 kbp | 0.017 | 0.027 |
20 | ~1,000 k(1Mb) | 0.016 | 0.026 |
21 | ~2 Mb | 0.015 | 0.023 |
22 | ~3 Mb | 0.014 | 0.021 |
23 | ~4 Mb | 0.013 | 0.020 |
24 | ~5 Mb | 0.013 | 0.019 |
25 | ~6 Mb | 0.012 | 0.018 |
26 | ~7 Mb | 0.012 | 0.017 |
27 | ~8 Mb | 0.011 | 0.017 |
28 | ~9 Mb | 0.011 | 0.016 |
29 | ~10 Mb | 0.010 | 0.015 |
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